PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022591
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 143aa    MW: 16339.4 Da    PI: 9.7683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022591genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-182372255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Cla022591 23 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPLAAARAYDTAVFYLRG 72
               69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-212381IPR016177DNA-binding domain
PROSITE profilePS5103222.2072380IPR001471AP2/ERF domain
SMARTSM003806.8E-352386IPR001471AP2/ERF domain
CDDcd000182.29E-272482No hitNo description
Gene3DG3DSA:3.30.730.103.1E-302481IPR001471AP2/ERF domain
PfamPF008474.3E-112472IPR001471AP2/ERF domain
PRINTSPR003676.2E-122435IPR001471AP2/ERF domain
PRINTSPR003676.2E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEESVETTVS DKRKQQAGRQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL GSYTTPLAAA  60
RAYDTAVFYL RGPSARLNFP DLILQDMDHQ LLDVSPSSIR KRAIEVGARV DAAAHQTSLR  120
QSKPISDKPD LNQFPDPESS DED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-152080263ATERF1
2gcc_A2e-152080263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-154LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-154LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444599.19e-97PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC308e-53RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0A0LR872e-96A0A0A0LR87_CUCSA; Uncharacterized protein
STRINGSolyc04g078640.1.11e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-54related to AP2 1